/home/torossee/tools/MultiQC_CMGG/test_data/msi_sensor_pro
msisensor-pro
This table show a summary of the output of the msisensor-pro pro command for MSI detection.
| Sample Name | Number of sites | Number of unstable sites | Percentage of unstable sites |
|---|---|---|---|
| test1-ready_summary_msi | 26 | 6 | 23.08% |
| test2-ready_summary_msi | 26 | 0 | 0.00% |
msisensor-pro - All Loci
Detailed MSI status for every loci with the coverage in brackets.
| Sample Name | chr10:32027613 | chr11:102322777 | chr11:118482322 | chr11:120479927 | chr11:94479764 | chr14:23183137 | chr14:93241684 | chr15:33865340 | chr16:14889234 | chr16:9840813 | chr18:64206286 | chr1:151224226 | chr1:200624913 | chr20:47657576 | chr20:62905339 | chr22:23793781 | chr2:111128603 | chr2:147926116 | chr2:42272077 | chr2:47414420 | chr2:95183613 | chr3:30650379 | chr4:54732045 | chr4:82864411 | chr7:75193019 | chrX:45076632 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| test1-ready_all_msi | Stable (1681) | Stable (398) | Stable (1060) | Stable (3733) | Unstable (2859) | Stable (402) | Stable (3325) | Unstable (4557) | Unstable (5254) | Stable (1366) | Stable (405) | Stable (2906) | Stable (4369) | Unstable (3175) | Stable (6094) | Stable (1297) | Stable (1522) | Stable (4206) | Stable (1086) | Stable (378) | Unstable (1276) | Stable (2947) | Stable (559) | Stable (3375) | Stable (6177) | Unstable (1341) |
| test2-ready_all_msi | Stable (3071) | Stable (601) | Stable (1959) | Stable (9049) | Stable (7249) | Stable (877) | Stable (6371) | Stable (8813) | Stable (7487) | Stable (1182) | Stable (1412) | Stable (4336) | Stable (7837) | Stable (7638) | Stable (8870) | Stable (3015) | Stable (2687) | Stable (7229) | Stable (2047) | Stable (577) | Stable (1275) | Stable (3455) | Stable (2137) | Stable (6058) | Stable (5493) | Stable (3723) |
msisensor-pro - Bargraph
This graph visualizes the MSI status per sample in a bargraph.