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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.31

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        Report generated on 2026-02-24, 12:21 based on data in: /home/torossee/tools/MultiQC_CMGG/test_data/msi_sensor_pro

        msisensor-pro

        This table show a summary of the output of the msisensor-pro pro command for MSI detection.

        Showing 2/2 rows and 3/3 columns.
        Sample NameNumber of sitesNumber of unstable sitesPercentage of unstable sites
        test1-ready_summary_msi
        26
        6
        23.08%
        test2-ready_summary_msi
        26
        0
        0.00%

        msisensor-pro - All Loci

        Detailed MSI status for every loci with the coverage in brackets.

        Showing 2/2 rows and 26/26 columns.
        Sample Namechr10:32027613chr11:102322777chr11:118482322chr11:120479927chr11:94479764chr14:23183137chr14:93241684chr15:33865340chr16:14889234chr16:9840813chr18:64206286chr1:151224226chr1:200624913chr20:47657576chr20:62905339chr22:23793781chr2:111128603chr2:147926116chr2:42272077chr2:47414420chr2:95183613chr3:30650379chr4:54732045chr4:82864411chr7:75193019chrX:45076632
        test1-ready_all_msi
        Stable (1681)
        Stable (398)
        Stable (1060)
        Stable (3733)
        Unstable (2859)
        Stable (402)
        Stable (3325)
        Unstable (4557)
        Unstable (5254)
        Stable (1366)
        Stable (405)
        Stable (2906)
        Stable (4369)
        Unstable (3175)
        Stable (6094)
        Stable (1297)
        Stable (1522)
        Stable (4206)
        Stable (1086)
        Stable (378)
        Unstable (1276)
        Stable (2947)
        Stable (559)
        Stable (3375)
        Stable (6177)
        Unstable (1341)
        test2-ready_all_msi
        Stable (3071)
        Stable (601)
        Stable (1959)
        Stable (9049)
        Stable (7249)
        Stable (877)
        Stable (6371)
        Stable (8813)
        Stable (7487)
        Stable (1182)
        Stable (1412)
        Stable (4336)
        Stable (7837)
        Stable (7638)
        Stable (8870)
        Stable (3015)
        Stable (2687)
        Stable (7229)
        Stable (2047)
        Stable (577)
        Stable (1275)
        Stable (3455)
        Stable (2137)
        Stable (6058)
        Stable (5493)
        Stable (3723)

        msisensor-pro - Bargraph

        This graph visualizes the MSI status per sample in a bargraph.

        Created with MultiQC

        MultiQC v1.31 - Available on GitHub.
        Written by Phil Ewels - Modified by Matthias De Smet